Protein structure description and prediction
A server for Ramachandran plots and Shape Strings
The empirical Ramachandran plot
a, b Ramachandran's plots (1968) and c, d: our experimental results (Hovmöller et al. 2002).
a and c are alanine, b and d are glycine.
Hovmöller,S., Zhou, T. And Ohlson, T. Conformations of amino
acids in proteins. Acta Cryst D58 (2002) 768-776.
A server for Ramachandran plots and Shape Strings
References
- Andersson,K.M. and Hovmöller,S. Phasing Proteins at low Resolution Acta Cryst D52 (1996) 1174-1180.
- Andersson, K.M. and Hovmöller, S. The average Atomic Volume and Density
of Proteins. Zeitschrift für Kristallografie 213 (1998) 369-373.
- Andersson,K.M. and Hovmöller,S. The protein content in crystals and packing coefficients in
different space groups. Acta. Cryst D56 (2000) 789-790.
- Hovmöller,S., Zhou, T. And Ohlson, T. Conformations of amino acids in proteins.
Acta Cryst D58 (2002) 768-776.
- Hovmöller,S. and Zhou,T.
Why are both ends of the polypeptide chain on the outside of proteins? PROTEINS: Structure, Function and Bioinformatics 55 (2004) 219-222.
- Kretsinger, R., Hovmöller,S.
and Ison,R. Prediction of protein structure. Methods in Enzymology 383 (2004) 1-27.
- Ison,R, Hovmöller,S and Kretsinger,R. Proteins and their shape strings. IEEE Engineering
in Medicine and Biology Magazine. 24 (2005) 41-49 Special
issue on "Computational Approaches in Proteomics"
- Shu,N., Zhou,T.and Hovmöller,S.
Prediction of zinc-binding sites in proteins from sequence. Bioinformatics
24 (2008) 775-782.
- Shu,N., Hovmöller,S. and Zhou,T.
Describing and Comparing Protein Structures Using Shape Strings. Current Protein and Peptide Science (2008) In press.
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